CentOS SciDB 15.7 install issue


#1

I’m getting an error at the “run.py install” part of my installation. I’m on CentOS 6 on a VirtualBox machine and getting the following error:

[scidb@beast-scidb scidbtrunk]$ ./run.py -v install
run.py: DEBUG: cmd=install
run.py: DEBUG: Executing: ['grep', 'CMAKE_INSTALL_PREFIX', '/home/scidb/scidb-15.7.0.9267/stage/build/CMakeCache.txt']
run.py: DEBUG: CMAKE_INSTALL_PREFIX:PATH=/home/scidb/scidbtrunk/stage/install
 (raw var line)
run.py: DEBUG: /home/scidb/scidbtrunk/stage/install (parsed var)
WARNING: about to delete *all* contents of /home/scidb/scidbtrunk/stage/install/* [y]|n: y
run.py: DEBUG: Executing: ['/bin/rm -rf /home/scidb/scidbtrunk/stage/install/*']
run.py: DEBUG: Executing: ['/usr/bin/make', 'install']
[  0%] Built target json_lib
[  0%] Built target MurmurHash_lib
[  8%] Built target util_lib
[  9%] Built target scidb_msg_lib
[  9%] Built target genmeta
[  9%] Built target catalog_lib
[ 13%] Built target array_lib
[ 15%] Built target system_lib
[ 17%] Built target compression_lib
[ 47%] Built target ops_lib
[ 49%] Built target scalar_proc_lib
[ 56%] Built target qproc_lib
[ 57%] Built target usr_namespace_lib
[ 58%] Built target io_lib
[ 59%] Built target network_lib
[ 59%] Built target scidb
[ 64%] Built target scidbclient
[ 64%] Built target dmalloc
[ 64%] Built target mpi_common
[ 66%] Built target mpi
[ 68%] Built target scalapackForMPICH2
[ 69%] Built target mpi_slave_common
[ 70%] Built target mpi_slave_direct
[ 70%] Built target mpi_slave_scidb
[ 75%] Built target dense_linear_algebra
[ 76%] Built target linear_algebra
[ 76%] Built target jdbc_build
[ 76%] Built target benchGen
[ 78%] Built target iquery
[ 79%] Built target dgenerator
[ 80%] Built target gen_matrix
[ 80%] Built target arg_separator
[ 82%] Built target preparecdashreport
[ 84%] Built target scidbtest
[ 87%] Built target scidbtestharness
[ 87%] Built target unit_tests
[ 87%] Built target point
[ 88%] Built target rational
[ 88%] Built target complex
[ 88%] Built target ra_decl
[ 88%] Built target more_math
[ 93%] Built target misc
[ 94%] Built target match
[ 95%] Built target bestmatch
[ 95%] Built target savebmp
[ 96%] Built target operators
[ 97%] Built target fits
[ 98%] Built target example_udos
[ 99%] Built target tile_integration
[100%] Built target prototype_load_tools
Install the project...
-- Install configuration: "Debug"
-- Installing: /home/scidb/scidbtrunk/stage/install/lib/libscidbclient.so
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/iquery
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/gen_matrix
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/benchGen
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/loadpipe.py
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/calculate_chunk_length.py
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/remove_arrays.py
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/scidblib/PSF_license.txt
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/scidblib/__init__.py
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/scidblib/scidb_math.py
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/scidblib/scidb_progress.py
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/scidblib/scidb_schema.py
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/scidblib/scidb_afl.py
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/scidblib/statistics.py
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/scidblib/util.py
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/scidblib/counter.py
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/scidblib/scidb_psf.py
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/scidblib/scidb_control.py
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/scidblib/pgpass_updater.py
-- Installing: /home/scidb/scidbtrunk/stage/install/jdbc/scidb4j.jar
-- Installing: /home/scidb/scidbtrunk/stage/install/jdbc/example.jar
-- Installing: /home/scidb/scidbtrunk/stage/install/jdbc/jdbctest.jar
-- Installing: /home/scidb/scidbtrunk/stage/install/bin/unit_tests
CMake Error at cmake_install.cmake:124 (FILE):
  file INSTALL cannot copy file
  "/home/scidb/scidb-15.7.0.9267/stage/build/tests/unit/unit_tests" to
  "/home/scidb/scidbtrunk/stage/install/bin/unit_tests".


make: *** [install] Error 1
run.py: ERROR: Command install failed: Abnormal return code: 2 on command ['/usr/bin/make', 'install']
run.py: ERROR: Make sure commands setup,make,install,start are performed (in that order) before stop,stopForce,tests
Traceback (most recent call last):
  File "./run.py", line 1261, in main
    args.func(scidbEnv)
  File "./run.py", line 669, in install
    ret = executeIt(cmdList)
  File "./run.py", line 295, in executeIt
    raise RuntimeError("Abnormal return code: %s on command %s" % (ret, cmdList))
RuntimeError: Abnormal return code: 2 on command ['/usr/bin/make', 'install']

Help please. I’m testing SciDB to see if it will work for our enterprise but the installation process has been tricky.


#2

I figured out my issue. My 8GB virtual machine ran out of disk space. I increased the disk size and the installation finished.